segName='   A'
seq="""
SER SER ILE GLY LEU VAL GLU ARG THR ASN 
ALA ALA LEU GLU SER SER SER LYS ASP LEU 
LYS ASN LYS ILE LEU LYS ILE LYS LYS GLU 
ALA THR GLY LYS GLY VAL LEU PHE GLU ALA 
PHE THR GLY LEU LYS THR GLY SER LYS VAL 
THR SER GLY GLY LEU ALA LEU ARG GLU ALA 
LYS VAL GLN ALA ILE VAL GLU THR GLY LYS 
PHE LEU LYS ILE ILE GLU GLU GLU ALA LEU 
LYS LEU LYS GLU THR GLY ASN SER GLY GLN 
PHE LEU ALA MET PHE ASP LEU MET LEU GLU 
VAL VAL GLU SER LEU GLU ASP VAL GLY ILE 
ILE GLY LEU LYS ALA ARG VAL LEU GLU GLU 
SER LYS ASN ASN PRO ILE ASN THR ALA GLU 
ARG LEU LEU ALA ALA LYS ALA GLN ILE GLU 
ASN GLN LEU LYS VAL VAL LYS GLU LYS GLN 
ASN ILE GLU ASN GLY GLY GLU LYS LYS ASN 
ASN LYS SER LYS LYS LYS LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
