segName='   A'
seq="""
MET ASP LYS GLY THR GLN TYR LYS ASP GLY 
TYR TYR ILE THR THR LEU ASN TYR ASN PHE 
ASN THR VAL TYR ASN ALA THR LEU GLN ALA 
ILE GLN ASN GLY GLN THR PHE ASP TYR LYS 
SER ASN PRO TYR ASP ILE SER VAL ASN LYS 
ASN ASN GLY THR ASP ALA GLU ILE VAL SER 
ALA SER ASP SER ASP SER THR ASP SER LEU 
GLN VAL ALA MET LYS LYS LEU PRO ASN ASN 
ALA THR ARG ILE SER ILE LYS TYR GLY SER 
GLN GLY ASN SER ILE ARG SER SER ALA LEU 
ILE GLY ILE ILE GLU GLY ASN ILE ARG TYR 
ALA ASN THR HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
