segName='   A'
seq="""
GLY HIS MET GLY SER PRO VAL SER TYR TYR 
PHE SER TYR ALA ASP GLY GLY THR SER HIS 
THR GLU TYR PRO ASP ASP SER SER ALA GLY 
SER PHE ILE LEU ASP ILE THR SER TYR LYS 
LYS THR GLY ASN SER THR LYS ALA LEU SER 
TRP ASN ALA SER GLY ASP SER TRP ILE HIS 
VAL ASN GLY SER SER VAL SER TYR ASP GLU 
ASN PRO ALA LYS GLU ARG ARG THR GLY LEU 
VAL THR LEU LYS GLN ASP GLU SER GLY LYS 
THR LEU SER LEU LYS ILE VAL GLN PRO GLY 
LYS THR SER ILE ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
