segName='   A'
seq="""
GLY SER HIS MET PRO VAL LEU ILE THR ARG 
PRO LEU GLU ASP GLN LEU VAL MET VAL GLY 
GLN ARG VAL GLU PHE GLU CYS GLU VAL SER 
GLU GLU GLY ALA GLN VAL LYS TRP LEU LYS 
ASP GLY VAL GLU LEU THR ARG GLU GLU THR 
PHE LYS TYR TRP PHE LYS LYS ASP GLY GLN 
ARG HIS HIS LEU ILE ILE ASN GLU ALA MET 
LEU GLU ASP ALA GLY HIS TYR ALA LEU CYS 
THR SER GLY GLY GLN ALA LEU ALA GLU LEU 
ILE VAL GLN GLU LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
