segName='   B'
seq="""
GLY SER GLU GLU LYS PRO LYS GLU GLY VAL 
LYS THR GLU ASN ASP HIS ILE ASN LEU LYS 
VAL ALA GLY GLN ASP GLY SER VAL VAL GLN 
PHE LYS ILE LYS ARG HIS THR PRO LEU SER 
LYS LEU MET LYS ALA TYR CYS GLU ARG GLN 
GLY LEU SER MET ARG GLN ILE ARG PHE ARG 
PHE ASP GLY GLN PRO ILE ASN GLU THR ASP 
THR PRO ALA GLN LEU GLU MET GLU ASP GLU 
ASP THR ILE ASP VAL PHE GLN GLN GLN THR 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
