segName='   A'
seq="""
GLY SER THR GLU CYS ARG LYS SER VAL PRO 
CYS GLY TRP GLU ARG VAL VAL LYS GLN ARG 
LEU PHE GLY LYS THR ALA GLY ARG PHE ASP 
VAL TYR PHE ILE SER PRO GLN GLY LEU LYS 
PHE ARG SER LYS SER SER LEU ALA ASN TYR 
LEU HIS LYS ASN GLY GLU THR SER LEU LYS 
PRO GLU ASP PHE ASP PHE THR VAL LEU SER 
LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
