segName='   A'
seq="""
MET GLY GLY ILE SER ILE TRP GLN LEU LEU 
ILE ILE ALA VAL ILE VAL VAL LEU LEU PHE 
GLY THR LYS LYS LEU GLY SER ILE GLY SER 
ASP LEU GLY ALA SER ILE LYS GLY PHE LYS 
LYS ALA MET SER ASP ASP GLU PRO LYS GLN 
ASP LYS THR SER GLN ASP ALA ASP PHE THR 
ALA LYS THR ILE ALA ASP LYS GLN ALA ASP 
THR ASN GLN GLU GLN ALA LYS THR GLU ASP 
ALA LYS ARG HIS ASP LYS GLU GLN VAL LEU 
GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
