segName='   A'
seq="""
HIS HIS HIS HIS HIS HIS MET THR PRO GLU 
GLN ARG GLU PHE LEU PRO GLU ILE LEU ALA 
GLU ILE ILE ALA ASN LEU ASP PRO THR LYS 
ILE LEU GLU GLU LEU LEU ARG ARG GLY LEU 
LEU THR PRO ALA GLU LEU GLN GLU VAL LEU 
ASP LEU LYS THR PRO GLU GLU GLN ALA LYS 
LYS LEU ILE ASP PHE ILE LEU LYS LEU SER 
PRO ALA ASP VAL GLN ALA ARG ILE ASN VAL 
LEU ARG ALA HIS GLY TYR GLN ALA LEU ALA 
ASP LYS LEU ASN LYS TYR LEU THR LEU GLU 
HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
