segName='   A'
seq="""
GLY THR ASP PHE GLY THR THR ASN ASN PHE 
VAL SER PRO ASN LEU GLN LEU LYS GLN ASN 
VAL LEU PRO PRO THR PRO LYS ASN ILE PRO 
LEU PRO ALA PHE GLY GLN ARG ILE ILE GLY 
TRP GLY THR GLY ALA GLU GLY ALA ARG GLN 
ARG LEU GLU ASN ILE GLN PRO ALA ASP VAL 
SER MET ILE LYS LYS GLN GLY THR THR LEU 
GLU MET ILE THR ALA TRP GLN ASP PHE TYR 
GLU GLN GLU GLN GLN ARG ASN GLU ASN ASN 
PRO THR ALA LYS TYR ARG ALA ARG LEU MET 
LYS LYS ILE ALA ASP LEU TRP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
