segName='   A'
seq="""
MET PRO LEU ILE THR PHE ILE SER PRO ASP 
GLY SER ARG LYS THR TYR GLU ALA TYR ASP 
GLY GLU THR LEU LEU SER LEU ALA HIS ARG 
ASN ASN VAL ASP LEU GLU GLY ALA CYS GLU 
GLY SER LEU ALA CYS SER THR CYS HIS VAL 
ILE ILE ASP PRO SER TRP TYR ASP ILE VAL 
GLU GLN HIS ASN GLU ILE SER ASP GLU GLU 
ASN ASP MET LEU ASP LEU ALA PHE GLY LEU 
THR ASP THR SER ARG LEU GLY CYS GLN ILE 
ILE LEU THR LYS GLU LEU ASP GLY LEU CYS 
VAL ILE LEU PRO THR GLU THR ARG ASN ILE 
SER PHE VAL LYS ASN SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
