segName='   A'
seq="""
GLY SER HIS MET GLY ARG ILE ALA ASP SER 
ARG LEU LEU TRP ASP TYR VAL TYR GLN LEU 
LEU SER ASP SER ARG TYR GLU ASN PHE ILE 
ARG TRP GLU ASP LYS GLU SER LYS ILE PHE 
ARG ILE VAL ASP PRO ASN GLY LEU ALA ARG 
LEU TRP GLY ASN HIS LYS ASN ARG THR ASN 
MET THR TYR GLU LYS MET SER ARG ALA LEU 
ARG HIS TYR TYR LYS LEU ASN ILE ILE ARG 
LYS GLU PRO GLY GLN ARG LEU LEU PHE ARG 
PHE MET LYS THR PRO ASP GLU ILE MET SER 
GLY ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
