segName='   A'
seq="""
ALA ASP GLU PRO ALA TYR LEU THR VAL GLY 
THR ASP VAL SER ALA LYS TYR ARG GLY ALA 
PHE CYS GLU ALA LYS ILE LYS THR VAL LYS 
ARG LEU VAL LYS VAL LYS VAL LEU LEU LYS 
GLN ASP ASN THR THR GLN LEU VAL GLN ASP 
ASP GLN VAL LYS GLY PRO LEU ARG VAL GLY 
ALA ILE VAL GLU THR ARG THR SER ASP GLY 
SER PHE GLN GLU ALA ILE ILE SER LYS LEU 
THR ASP ALA SER TRP TYR THR VAL VAL PHE 
ASP ASP GLY ASP GLU ARG THR LEU ARG ARG 
THR SER LEU CYS LEU LYS GLY GLU ARG HIS 
PHE ALA GLU SER GLU THR LEU ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
