segName='   A'
seq="""
SER HIS MET CYS PRO ALA VAL SER CYS LEU 
GLN PRO GLU GLY ASP GLU VAL ASP TRP VAL 
GLN CYS ASP GLY SER CYS ASN GLN TRP PHE 
HIS GLN VAL CYS VAL GLY VAL SER PRO GLU 
MET ALA GLU LYS GLU ASP TYR ILE CYS VAL 
ARG CYS THR VAL LYS ASP ALA PRO SER ARG 
LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
