segName='   A'
seq="""
GLY SER ALA ALA ASP LEU GLU LEU GLU ARG 
ALA ALA ASP VAL LYS TRP GLU ASP GLN ALA 
GLU ILE SER GLY SER SER PRO ILE LEU SER 
ILE THR ILE SER GLU ASP GLY SER MET SER 
ILE LYS ASN GLU GLU GLU GLU GLN THR LEU 
GLY GLY GLY GLY SER GLY GLY GLY GLY GLU 
PHE ALA GLY VAL LEU TRP ASP VAL PRO SER 
PRO PRO PRO VAL GLY LYS ALA GLU LEU GLU 
ASP GLY ALA TYR ARG ILE LYS GLN LYS GLY 
ILE LEU GLY TYR SER GLN ILE GLY ALA GLY 
VAL TYR LYS GLU GLY THR PHE HIS THR MET 
TRP HIS VAL THR ARG GLY ALA VAL LEU MET 
HIS LYS GLY LYS ARG ILE GLU PRO SER TRP 
ALA ASP VAL LYS LYS ASP LEU ILE SER TYR 
GLY GLY GLY TRP LYS LEU GLU GLY GLU TRP 
LYS GLU GLY GLU GLU VAL GLN VAL LEU ALA 
LEU GLU PRO GLY LYS ASN PRO ARG ALA VAL 
GLN THR LYS PRO GLY LEU PHE LYS THR ASN 
ALA GLY THR ILE GLY ALA VAL SER LEU ASP 
PHE SER PRO GLY THR SER GLY SER PRO ILE 
ILE ASP LYS LYS GLY LYS VAL VAL GLY LEU 
TYR GLY ASN GLY VAL VAL THR ARG SER GLY 
ALA TYR VAL SER ALA ILE ALA GLN THR GLU 
LYS SER ILE GLU ASP ASN PRO GLU ILE GLU 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
