segName='   A'
seq="""
MET ALA GLU ALA LEU PHE LYS GLU ILE ASP 
VAL ASN GLY ASP GLY ALA VAL SER TYR GLU 
GLU VAL LYS ALA PHE VAL SER LYS LYS ARG 
ALA ILE LYS ASN GLU GLN LEU LEU GLN LEU 
ILE PHE LYS SER ILE ASP ALA ASP GLY ASN 
GLY GLU ILE ASP GLN ASN GLU PHE ALA LYS 
PHE TYR GLY SER ILE GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
