segName='   A'
seq="""
GLY SER SER SER GLY VAL THR ALA GLU GLN 
MET GLN GLU PHE LYS GLN SER PHE ASP ALA 
PHE ASP GLY ASN HIS ASP GLY ILE LEU ASP 
LYS LEU GLU PHE ARG SER CYS LEU SER SER 
MET GLY LEU ILE ASP ILE ASP PHE THR GLY 
GLY GLU ASP ALA GLN TYR ASP ALA ILE TYR 
ASN ASN VAL THR LYS GLY GLU ASN GLY VAL 
SER PHE ASP ASN TYR VAL GLN TYR MET LYS 
GLU LYS ASN ASP GLU ASN PRO SER PRO GLU 
GLN LEU ASN GLU ILE PHE SER THR ILE ALA 
ALA GLY LYS ASP SER ILE THR GLU THR ASP 
MET GLN LYS ALA GLY MET SER ALA GLU GLN 
ILE GLU TYR VAL LYS ALA ASN LEU PRO GLN 
LYS GLY ASP GLY TYR ASP TYR ALA ALA TRP 
VAL LYS THR ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
