segName='   A'
seq="""
GLY SER MET LYS ARG GLY VAL GLU MET SER 
ILE HIS ASP LEU CYS GLU ASP GLN GLU GLN 
TRP ALA MET GLN THR LEU MET GLY SER GLY 
VAL LEU ALA ARG CYS ARG ILE HIS ASN ASP 
VAL ILE LEU ASP SER GLY ASN ASP ALA SER 
SER ALA TYR LYS LEU GLY THR TYR LEU TYR 
GLN LYS ASP ASN SER CYS ASN LEU PHE ASN 
THR LEU THR GLU ALA ARG ASP ALA ILE LYS 
ASP ALA TYR GLU SER TYR CYS GLY ILE ASP 
ASP CYS PRO GLN CYS SER LYS TYR ILE ASP 
ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
