segName='   A'
seq="""
MET LYS SER ASN GLU HIS ASP ASP CYS GLN 
VAL THR ASN PRO SER THR GLY HIS LEU PHE 
ASP LEU SER SER LEU SER GLY ARG ALA GLY 
PHE THR ALA ALA TYR ALA LYS GLY TRP GLY 
VAL TYR MET SER ILE CYS GLY GLU ASN GLU 
ASN CYS PRO PRO GLY VAL GLY ALA CYS PHE 
GLY GLN THR ARG ILE SER VAL GLY LYS ALA 
ASN LYS ARG LEU ARG TYR VAL ASP GLN VAL 
LEU GLN LEU VAL TYR LYS ASP GLY SER PRO 
CYS PRO SER LYS SER GLY LEU SER TYR LYS 
SER VAL ILE SER PHE VAL CYS ARG PRO GLU 
ALA GLY PRO THR ASN ARG PRO MET LEU ILE 
SER LEU ASP LYS GLN THR CYS THR LEU PHE 
PHE SER TRP HIS THR PRO LEU ALA CYS GLU 
LEU ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
