segName='   A'
seq="""
GLY SER GLU VAL ALA LYS THR LEU LYS LYS 
ASN GLU SER LEU LYS ALA CYS ILE ARG CYS 
ASN SER PRO ALA LYS TYR ASP CYS TYR LEU 
GLN ARG ALA THR CYS LYS ARG GLU GLY CYS 
GLY PHE ASP TYR CYS THR LYS CYS LEU CYS 
ASN TYR HIS THR THR LYS ASP CYS SER ASP 
GLY LYS LEU LEU LYS ALA SER CYS LYS ILE 
GLY PRO LEU PRO GLY THR LYS LYS SER LYS 
LYS ASN LEU ARG ARG LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
