segName='   A'
seq="""
GLY SER SER PRO ASN SER GLU ASP ASP SER 
SER ALA ILE SER THR MET THR THR THR THR 
ALA ALA PRO THR SER THR SER VAL LYS PRO 
ALA ALA PRO ARG ALA GLU VAL ARG VAL TYR 
ASN ILE SER GLY THR GLU GLY ALA ALA ALA 
ARG THR ALA ASP ARG LEU LYS ALA ALA GLY 
PHE THR VAL THR ASP VAL GLY ASN LEU SER 
LEU PRO ASP VAL ALA ALA THR THR VAL TYR 
TYR THR GLU VAL GLU GLY GLU ARG ALA THR 
ALA ASP ALA VAL GLY ARG THR LEU GLY ALA 
ALA VAL GLU LEU ARG LEU PRO GLU LEU SER 
ASP GLN PRO PRO GLY VAL ILE VAL VAL VAL 
THR GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
