segName='   A'
seq="""
MET GLU ILE LYS LEU ILE LYS GLY PRO LYS 
GLY LEU GLY PHE SER ILE ALA GLY GLY VAL 
GLY ASN GLN HIS ILE PRO GLY ASP ASN SER 
ILE TYR VAL THR LYS ILE ILE GLU GLY GLY 
ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE 
GLY ASP LYS LEU LEU ALA VAL ASN ASN VAL 
CYS LEU GLU GLU VAL THR HIS GLU GLU ALA 
VAL THR ALA LEU LYS ASN THR SER ASP PHE 
VAL TYR LEU LYS VAL ALA LYS PRO THR GLY 
SER HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
