segName='   A'
seq="""
MET LEU THR LEU ILE GLN GLY LYS LYS ILE 
VAL ASN HIS LEU ARG SER ARG LEU ALA PHE 
GLU TYR ASN GLY GLN LEU ILE LYS ILE LEU 
SER LYS ASN ILE VAL ALA VAL GLY SER LEU 
ARG ARG GLU GLU LYS MET LEU ASN ASP VAL 
ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS 
LEU LEU LYS HIS VAL LEU PRO ASN ILE ARG 
ILE LYS GLY LEU SER PHE SER VAL LYS VAL 
CYS GLY GLU ARG LYS CYS VAL LEU PHE ILE 
GLU TRP GLU LYS LYS THR TYR GLN LEU ASP 
LEU PHE THR ALA LEU ALA GLU GLU LYS PRO 
TYR ALA ILE PHE HIS PHE THR GLY PRO VAL 
SER TYR LEU ILE ARG ILE ARG ALA ALA LEU 
LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR 
GLY LEU PHE LYS ASN GLN THR LEU VAL PRO 
LEU LYS ILE THR THR GLU LYS GLU LEU ILE 
LYS GLU LEU GLY PHE THR TYR ARG ILE PRO 
LYS LYS ARG LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
