segName='   A'
seq="""
MET GLU SER SER SER GLU GLN LYS PHE TYR 
ASN PHE VAL ILE LEU HIS ALA ARG ALA ASP 
GLU HIS ILE ALA LEU ARG VAL ARG GLU LYS 
LEU GLU ALA LEU GLY VAL PRO ASP GLY ALA 
THR PHE CYS GLU ASP PHE GLN VAL HIS GLY 
ARG GLY GLU LEU SER CYS LEU GLN ASP ALA 
ILE ASP HIS SER ALA PHE ILE ILE LEU LEU 
LEU THR SER ASN PHE ASP CYS ARG LEU SER 
LEU HIS GLN VAL ASN GLN ALA MET MET SER 
ASN LEU THR ARG GLN GLY SER PRO ASP CYS 
VAL ILE PRO PHE LEU PRO LEU GLU SER SER 
PRO ALA GLN LEU SER SER ASP THR ALA SER 
LEU LEU SER GLY LEU VAL ARG LEU ASP GLU 
HIS SER GLN ILE PHE ALA ARG LYS VAL ALA 
ASN THR PHE LYS PRO HIS ARG LEU GLN ALA 
ARG LYS ALA MET TRP ARG LYS GLU GLN ASP 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
