segName='   A'
seq="""
GLY ALA MET GLU GLN LYS THR VAL ILE PRO 
GLY MET PRO THR VAL ILE PRO PRO GLY LEU 
THR ARG GLU GLN GLU ARG ALA TYR ILE VAL 
GLN LEU GLN ILE GLU ASP LEU THR ARG LYS 
LEU ARG THR GLY ASP LEU GLY ILE PRO PRO 
ASN PRO GLU ASP ARG SER PRO SER PRO GLU 
PRO ILE TYR ASN SER GLU GLY LYS ARG LEU 
ASN THR ARG GLU PHE ARG THR ARG LYS LYS 
LEU GLU GLU GLU ARG HIS ASN LEU ILE THR 
GLU MET VAL ALA LEU ASN PRO ASP PHE LYS 
PRO PRO ALA ASP TYR LYS PRO PRO ALA THR 
ARG VAL SER ASP LYS VAL MET ILE PRO GLN 
ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
