segName='   A'
seq="""
MET SER MET ALA MET SER GLN SER ASN ARG 
GLU LEU VAL VAL ASP PHE LEU SER TYR LYS 
LEU SER GLN LYS GLY TYR SER TRP SER GLN 
PHE SER ASP VAL GLU GLU ASN ARG THR GLU 
ALA PRO GLU GLY THR GLU SER GLU ALA VAL 
LYS GLN ALA LEU ARG GLU ALA GLY ASP GLU 
PHE GLU LEU ARG TYR ARG ARG ALA PHE SER 
ASP LEU THR SER GLN LEU HIS ILE THR PRO 
GLY THR ALA TYR GLN SER PHE GLU GLN VAL 
VAL ASN GLU LEU PHE ARG ASP GLY VAL ASN 
TRP GLY ARG ILE VAL ALA PHE PHE SER PHE 
GLY GLY ALA LEU CYS VAL GLU SER VAL ASP 
LYS GLU MET GLN VAL LEU VAL SER ARG ILE 
ALA ALA TRP MET ALA THR TYR LEU ASN ASP 
HIS LEU GLU PRO TRP ILE GLN GLU ASN GLY 
GLY TRP ASP THR PHE VAL GLU LEU TYR GLY 
ASN ASN ALA ALA ALA GLU SER ARG LYS GLY 
GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS 
HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
