segName='   A'
seq="""
GLY SER ARG VAL LYS ALA LEU GLU GLU LYS 
VAL LYS ALA LEU GLU GLU LYS VAL LYS ALA 
LEU GLY GLY GLY GLY ARG ILE GLU GLU LEU 
LYS LYS LYS CYS GLU GLU LEU LYS LYS LYS 
ILE GLU GLU LEU GLY GLY GLY GLY GLU VAL 
LYS LYS VAL GLU GLU GLU VAL LYS LYS LEU 
GLU GLU GLU ILE LYS LYS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
