segName='   A'
seq="""
MET ASN GLN GLU SER VAL VAL ALA ALA VAL 
LEU ILE PRO ILE ASN THR ALA LEU THR VAL 
GLY MET MET THR THR ARG VAL VAL SER PRO 
THR GLY ILE PRO ALA GLU ASP ILE PRO ARG 
LEU ILE SER MET GLN VAL ASN GLN VAL VAL 
PRO MET GLY THR THR LEU MET PRO ASP MET 
VAL LYS GLY TYR ALA PRO ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
