segName='   B'
seq="""
GLU ASN LYS GLN VAL GLU GLU ILE LEU ARG 
LEU GLU LYS GLU ILE GLU ASP LEU GLN ARG 
MET LYS GLU GLN GLN GLU LEU SER LEU THR 
GLU ALA SER LEU GLN LYS LEU GLN GLU ARG 
ARG ASP GLN GLU LEU ARG ARG LEU GLU GLU 
GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
