segName='   A'
seq="""
GLY SER ASN GLU VAL THR LEU LEU ASP SER 
ARG SER VAL GLN GLY GLU LEU GLY TRP ILE 
ALA SER PRO LEU GLU GLY GLY TRP GLU GLU 
VAL SER ILE MET ASP GLU LYS ASN THR PRO 
ILE ARG THR TYR GLN VAL CYS ASN VAL MET 
GLU PRO SER GLN ASN ASN TRP LEU ARG THR 
ASP TRP ILE THR ARG GLU GLY ALA GLN ARG 
VAL TYR ILE GLU ILE LYS PHE THR LEU ARG 
ASP CYS ASN SER LEU PRO GLY VAL MET GLY 
THR CYS LYS GLU THR PHE ASN LEU TYR TYR 
TYR GLU SER ASP ASN ASP LYS GLU ARG PHE 
ILE ARG GLU ASN GLN PHE VAL LYS ILE ASP 
THR ILE ALA ALA ASP GLU SER PHE THR GLN 
VAL ASP ILE GLY ASP ARG ILE MET LYS LEU 
ASN THR GLU ILE ARG ASP VAL GLY PRO LEU 
SER LYS LYS GLY PHE TYR LEU ALA PHE GLN 
ASP VAL GLY ALA CYS ILE ALA LEU VAL SER 
VAL ARG VAL PHE TYR LYS LYS ALA PRO LEU 
THR VAL ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
