segName='   A'
seq="""
GLY SER THR MET HIS PHE THR ASP ASP ASN 
GLU ASN ASP THR SER GLU THR MET GLU SER 
LEU ILE ASP LYS GLY LYS LEU ASP GLN VAL 
VAL TYR ASP ASP GLN LEU TYR HIS LEU LYS 
GLU LYS VAL ASP GLU ASP LYS LYS GLY LYS 
VAL ILE GLY ALA ILE GLY GLN THR PHE PHE 
VAL ASP GLY ASP GLY LYS ARG TRP SER GLU 
GLU GLU LEU LYS GLU PRO TYR ILE SER ASN 
ASN PRO ASP GLU ILE ARG GLU LYS LYS PRO 
LEU ARG TYR GLY LYS VAL TYR SER THR ASN 
GLU ASP SER ASP ALA LYS ASP GLU ILE ILE 
VAL GLU PHE ASN ARG GLU TYR TYR ARG ALA 
VAL LEU ILE LYS ASN GLU LYS GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
