segName='   B'
seq="""
GLY SER GLU LEU GLU THR ALA MET GLU THR 
LEU ILE ASN VAL PHE HIS ALA HIS SER GLY 
LYS GLU GLY ASP LYS TYR LYS LEU SER LYS 
LYS GLU LEU LYS GLU LEU LEU GLN THR GLU 
LEU SER GLY PHE LEU ASP ALA GLN LYS ASP 
VAL ASP ALA VAL ASP LYS VAL MET LYS GLU 
LEU ASP GLU ASN GLY ASP GLY GLU VAL ASP 
PHE GLN GLU TYR VAL VAL LEU VAL ALA ALA 
LEU THR VAL ALA MET ASN ASN PHE PHE TRP 
GLU ASN SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
