segName='   A'
seq="""
ARG THR MET ASP THR GLN ASN ASP VAL GLU 
SER ALA GLY ARG GLN SER GLU PRO MET GLU 
ALA ALA ASP ARG GLN ALA GLU HIS PRO GLY 
ALA PRO THR GLN SER GLU MET LYS GLU PHE 
GLN GLU GLU ILE LYS GLU GLY VAL GLU GLU 
THR LYS HIS GLU GLY ASP PRO GLU MET THR 
ARG LEU MET VAL THR GLU LYS GLN GLU SER 
LYS ASN PHE SER LYS MET ALA LYS SER GLN 
SER PHE SER THR ARG ILE GLU GLU LEU GLY 
GLY SER ILE SER PHE LEU THR GLU THR GLY 
VAL THR MET ILE GLU LEU PRO LYS THR VAL 
SER GLU HIS ASP MET ASP GLN LEU LEU HIS 
ASP ILE LEU ALA ALA GLY GLY VAL VAL GLY 
LEU ASP SER GLU VAL LYS LEU ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
