segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER HIS 
MET SER LEU ASP GLU ASN GLU VAL ALA ALA 
ASN VAL GLU THR ARG PRO GLU LEU ILE THR 
ARG THR GLU GLU ILE PRO PHE GLU VAL ILE 
LYS LYS GLU ASN PRO ASN LEU PRO ALA GLY 
GLN GLU ASN ILE ILE THR ALA GLY VAL LYS 
GLY GLU ARG THR HIS TYR ILE SER VAL LEU 
THR GLU ASN GLY LYS THR THR GLU THR VAL 
LEU ASP SER GLN VAL THR LYS GLU VAL ILE 
ASN GLN VAL VAL GLU VAL GLY ALA PRO VAL 
THR HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
