segName='   A'
seq="""
SER GLN PHE GLU LYS GLN LYS GLU GLN GLY 
ASN SER LEU PHE LYS GLN GLY LEU TYR ARG 
GLU ALA VAL HIS CYS TYR ASP GLN LEU ILE 
THR ALA GLN PRO GLN ASN PRO VAL GLY TYR 
SER ASN LYS ALA MET ALA LEU ILE LYS LEU 
GLY GLU TYR THR GLN ALA ILE GLN MET CYS 
GLN GLN GLY LEU ARG TYR THR SER THR ALA 
GLU HIS VAL ALA ILE ARG SER LYS LEU GLN 
TYR ARG LEU GLU LEU ALA GLN GLY ALA VAL 
GLY SER VAL GLN ILE PRO VAL VAL GLU VAL 
ASP GLU LEU PRO GLU GLY TYR ASP ARG SER 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
