segName='   A'
seq="""
GLY ALA MET GLY GLN TYR GLU GLY VAL PHE 
TYR THR ASP GLY SER ALA ILE LYS SER PRO 
ASP PRO THR LYS SER ASN ASN ALA GLY MET 
GLY ILE VAL HIS ALA THR TYR LYS PRO GLU 
TYR GLN VAL LEU ASN GLN TRP SER ILE PRO 
LEU GLY ASN HIS THR ALA GLN MET ALA GLU 
ILE ALA ALA VAL GLU PHE ALA CYS LYS LYS 
ALA LEU LYS ILE PRO GLY PRO VAL LEU VAL 
ILE THR ASP SER PHE TYR VAL ALA GLU SER 
ALA ASN LYS GLU LEU PRO TYR TRP LYS SER 
ASN GLY PHE VAL ASN ASN LYS LYS LYS PRO 
LEU LYS HIS ILE SER LYS TRP LYS SER ILE 
ALA GLU CYS LEU SER MET LYS PRO ASP ILE 
THR ILE GLN HIS GLU LYS GLY HIS GLN PRO 
THR ASN THR SER ILE HIS THR GLU GLY ASN 
ALA LEU ALA ASP LYS LEU ALA THR GLN GLY 
SER TYR VAL VAL ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
