segName='   A'
seq="""
GLY ALA MET ASP PRO GLN GLU GLU THR GLY 
VAL ARG VAL GLU LEU ALA GLU GLU ASP ASP 
GLY GLU LYS ILE ALA ILE LYS LEU TRP LEU 
ARG ILE GLU ASP ILE LYS LYS LEU LYS GLY 
LYS TYR LYS ASP ASN GLU ALA ILE GLU PHE 
SER PHE ASP LEU GLU ARG ASP VAL PRO GLU 
ASP VAL ALA GLN GLU MET VAL GLU SER GLY 
TYR VAL CYS GLU GLY ASP HIS LYS THR MET 
ALA LYS ALA ILE LYS ASP ARG VAL SER LEU 
ILE LYS ARG LYS ARG GLU GLN ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
