segName='   A'
seq="""
GLY ALA MET ALA PHE ASP GLY GLU ASP GLU 
VAL THR GLY PRO ASP ALA ASP ARG ALA ARG 
ALA ALA ALA VAL GLN ALA VAL PRO GLY GLY 
THR ALA GLY GLU VAL GLU THR GLU THR GLY 
GLU GLY ALA ALA ALA TYR GLY VAL LEU VAL 
THR ARG PRO ASP GLY THR ARG VAL GLU VAL 
HIS LEU ASP ARG ASP PHE ARG VAL LEU ASP 
THR GLU PRO ALA ASP GLY ASP GLY GLY LEU 
GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
