segName='   A'
seq="""
VAL GLU ASP GLU GLY LEU GLN PRO TYR GLN 
VAL ARG VAL ILE CYS ARG PRO LYS ALA GLU 
THR TYR VAL ARG ALA HIS ILE VAL GLN ARG 
THR SER SER ASN ASP ILE THR LEU ARG GLY 
ILE ARG THR GLY PRO ALA GLY ASP ASP ASN 
ILE THR LEU THR ALA HIS LEU LEU MET VAL 
GLY HIS THR PRO ALA LYS LEU GLU ARG LEU 
VAL ALA GLU LEU SER LEU GLN PRO GLY VAL 
TYR ALA VAL HIS TRP TYR ALA GLY GLU HIS 
ALA GLN ALA GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
