segName='   A'
seq="""
GLY SER GLY ASN SER HIS THR THR PRO TRP 
THR ASN PRO GLY LEU ALA GLU ASN PHE MET 
ASN SER PHE MET GLN GLY LEU SER SER MET 
PRO GLY PHE THR ALA SER GLN LEU ASP ASP 
MET SER THR ILE ALA GLN SER MET VAL GLN 
SER ILE GLN SER LEU ALA ALA GLN GLY ARG 
THR SER PRO ASN LYS LEU GLN ALA LEU ASN 
MET ARG PHE ALA SER SER MET ALA GLU ILE 
ALA ALA SER GLU GLU GLY GLY GLY SER LEU 
SER THR LYS THR SER SER ILE ALA SER ALA 
MET SER ASN ALA PHE LEU GLN THR THR GLY 
VAL VAL ASN GLN PRO PHE ILE ASN GLU ILE 
THR GLN LEU VAL SER MET PHE ALA GLN ALA 
GLY MET ASN ASP VAL SER ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
