segName='   A'
seq="""
MET SER THR ALA ALA ASP LEU LEU ARG GLN 
GLY ALA ALA CYS SER VAL LEU TYR LEU THR 
SER VAL GLU THR GLU SER LEU THR GLY PRO 
GLN ALA VAL ALA ARG ALA SER SER ALA ALA 
LEU SER CYS SER PRO ARG PRO THR PRO ALA 
VAL VAL HIS PHE LYS VAL SER ALA GLN GLY 
ILE THR LEU THR ASP ASN GLN ARG LYS LEU 
PHE PHE ARG ARG HIS TYR PRO VAL ASN SER 
ILE THR PHE SER SER THR ASP PRO GLN ASP 
ARG ARG TRP THR ASN PRO ASP GLY THR THR 
SER LYS ILE PHE GLY PHE VAL ALA LYS LYS 
PRO GLY SER PRO TRP GLU ASN VAL CYS HIS 
LEU PHE ALA GLU LEU ASP PRO ASP GLN PRO 
ALA GLY ALA ILE VAL THR PHE ILE THR LYS 
VAL LEU LEU GLY GLN ARG LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
