segName='   A'
seq="""
ILE ASP PRO PHE THR PRO GLN THR LEU SER 
ARG GLY TRP GLY ASP GLN LEU ILE TRP THR 
GLN THR TYR GLU ALA ALA LEU TYR LYS SER 
LYS THR SER ASN LYS PRO LEU MET ILE ILE 
HIS HIS LEU ASP GLU CYS PRO HIS SER GLN 
ALA LEU LYS LYS VAL PHE ALA GLU ASN LYS 
GLU ILE GLN LYS LEU ALA GLU GLN PHE VAL 
LEU LEU ASN LEU VAL TYR GLU THR THR ASP 
LYS HIS LEU SER PRO ASP GLY GLN TYR VAL 
PRO ARG ILE MET PHE VAL ASP PRO SER LEU 
THR VAL ARG ALA ASP ILE THR GLY ARG TYR 
SER ASN ARG LEU TYR ALA TYR GLU PRO ALA 
ASP THR ALA LEU LEU LEU ASP ASN MET LYS 
LYS ALA LEU LYS LEU LEU LYS THR GLU LEU 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
