segName='   A'
seq="""
MET CYS ASP LEU PRO GLN THR HIS SER LEU 
GLY SER ARG ARG THR LEU MET LEU LEU ALA 
GLN MET ARG LYS ILE SER LEU PHE SER CYS 
LEU LYS ASP ARG HIS ASP PHE GLY PHE PRO 
GLN GLU GLU PHE GLY ASN GLN PHE GLN LYS 
ALA GLU THR ILE PRO VAL LEU HIS GLU MET 
ILE GLN GLN ILE PHE ASN LEU PHE SER THR 
LYS ASP SER SER ALA ALA TRP ASP GLU THR 
LEU LEU ASP LYS PHE TYR THR GLU LEU TYR 
GLN GLN LEU ASN ASP LEU GLU ALA CYS VAL 
ILE GLN GLY VAL GLY VAL THR GLU THR PRO 
LEU MET LYS GLU ASP SER ILE LEU ALA VAL 
ARG LYS TYR PHE GLN ARG ILE THR LEU TYR 
LEU LYS GLU LYS LYS TYR SER PRO CYS ALA 
TRP GLU VAL VAL ARG ALA GLU ILE MET ARG 
SER PHE SER LEU SER THR ASN LEU GLN GLU 
SER LEU ARG SER LYS GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
