segName='   A'
seq="""
GLY SER HIS MET VAL GLU ARG PRO PRO VAL 
VAL THR ILE MET GLY HIS VAL ASP HIS GLY 
LYS THR THR LEU LEU ASP ALA ILE ARG HIS 
SER LYS VAL THR GLU GLN GLU ALA GLY GLY 
ILE THR GLN HIS ILE GLY ALA TYR GLN VAL 
THR VAL ASN ASP LYS LYS ILE THR PHE LEU 
ASP THR PRO GLY HIS GLU ALA PHE THR THR 
MET ARG ALA ARG GLY ALA GLN VAL THR ASP 
ILE VAL ILE LEU VAL VAL ALA ALA ASP ASP 
GLY VAL MET PRO GLN THR VAL GLU ALA ILE 
ASN HIS ALA LYS ALA ALA ASN VAL PRO ILE 
ILE VAL ALA ILE ASN LYS MET ASP LYS PRO 
GLU ALA ASN PRO ASP ARG VAL MET GLN GLU 
LEU MET GLU TYR ASN LEU VAL PRO GLU GLU 
TRP GLY GLY ASP THR ILE PHE CYS LYS LEU 
SER ALA LYS THR LYS GLU GLY LEU ASP HIS 
LEU LEU GLU MET ILE LEU LEU VAL SER GLU 
MET GLU GLU LEU LYS ALA ASN PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
