segName='   A'
seq="""
THR GLU PHE LYS ALA GLY SER ALA LYS LYS 
GLY ALA THR LEU PHE LYS THR ARG CYS LEU 
GLN CYS HIS THR VAL GLU LYS GLY GLY PRO 
HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE 
PHE GLY ARG HIS SER GLY GLN ALA GLU GLY 
TYR SER TYR THR ASP ALA ASN ILE LYS LYS 
ASN VAL LEU TRP ASP GLU ASN ASN MET SER 
GLU TYR LEU THR ASN HIS ALA LYS TYR ILE 
PRO GLY THR LYS MET ALA PHE GLY GLY LEU 
LYS LYS GLU LYS ASP ARG ASN ASP LEU ILE 
THR TYR LEU LYS LYS ALA THR GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
