segName='   A'
seq="""
GLY ASP LYS GLU GLU CYS THR VAL PRO ILE 
GLY TRP SER GLU PRO VAL LYS GLY LEU CYS 
LYS ALA ARG PHE THR ARG TYR TYR CYS MET 
GLY ASN CYS CYS LYS VAL TYR GLU GLY CYS 
TYR THR GLY GLY TYR SER ARG MET GLY GLU 
CYS ALA ARG ASN CYS PRO GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
