segName='   A'
seq="""
GLY SER HIS MET ARG LEU LEU TRP ASP TYR 
VAL TYR GLN LEU LEU SER ASP SER ARG TYR 
GLU ASN PHE ILE ARG TRP GLU ASP LYS GLU 
SER LYS ILE PHE ARG ILE VAL ASP PRO ASN 
GLY LEU ALA ARG LEU TRP GLY ASN HIS LYS 
ASN ARG THR ASN MET THR TYR GLU LYS MET 
SER ARG ALA LEU ARG HIS TYR TYR LYS LEU 
ASN ILE ILE ARG LYS GLU PRO GLY GLN ARG 
LEU LEU PHE ARG PHE MET LYS THR PRO ASP 
GLU ILE MET SER GLY ARG THR ASP ARG LEU 
GLU HIS LEU GLU SER GLN VAL LEU ASP GLU 
GLN THR TYR GLN GLU ASP GLU PRO THR ILE 
ALA SER PRO VAL GLY TRP PRO ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
