segName='   A'
seq="""
GLY HIS GLY SER ALA GLY THR SER VAL THR 
LEU GLN LEU ASP ASP GLY SER GLY ARG THR 
TYR GLN LEU ARG GLU GLY SER ASN ILE ILE 
GLY ARG GLY GLN ASP ALA GLN PHE ARG LEU 
PRO ASP THR GLY VAL SER ARG ARG HIS LEU 
GLU ILE ARG TRP ASP GLY GLN VAL ALA LEU 
LEU ALA ASP LEU ASN SER THR ASN GLY THR 
THR VAL ASN ASN ALA PRO VAL GLN GLU TRP 
GLN LEU ALA ASP GLY ASP VAL ILE ARG LEU 
GLY HIS SER GLU ILE ILE VAL ARG MET HIS 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
