segName='   A'
seq="""
GLY GLN ALA PRO PRO GLY PRO PRO ALA SER 
GLY PRO CYS ALA ASP LEU GLN SER ALA ILE 
ASN ALA VAL THR GLY GLY PRO ILE ALA PHE 
GLY ASN ASP GLY ALA SER LEU ILE PRO ALA 
ALA TYR GLU ILE LEU ASN ARG VAL ALA ASP 
LYS LEU LYS ALA CYS PRO ASP ALA ARG VAL 
THR ILE ASN GLY TYR THR ASP ASN THR GLY 
SER GLU GLY ILE ASN ILE PRO LEU SER ALA 
GLN ARG ALA LYS ILE VAL ALA ASP TYR LEU 
VAL ALA ARG GLY VAL ALA GLY ASP HIS ILE 
ALA THR VAL GLY LEU GLY SER VAL ASN PRO 
ILE ALA SER ASN ALA THR PRO GLU GLY ARG 
ALA LYS ASN ARG ARG VAL GLU ILE VAL VAL 
ASN HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
