segName='   A'
seq="""
MET GLU LYS ALA MET PRO GLU SER PHE VAL 
VAL ARG ARG GLU ALA HIS LEU ALA ALA PRO 
PRO ALA ALA VAL PHE ALA LEU MET THR ASP 
PRO GLU LYS ILE LEU ARG TRP MET GLY THR 
GLU ALA GLU VAL GLU PRO GLU PRO GLY GLY 
LEU TYR LEU VAL ASN VAL THR GLY ALA ARG 
PHE ALA ARG GLY SER PHE ARG GLU VAL VAL 
PRO VAL HIS ARG LEU ALA TYR SER PHE GLY 
TRP ASP GLY SER GLU VAL VAL PRO PRO GLY 
SER SER LEU VAL GLU ILE ASP LEU ILE GLU 
GLN GLY GLY GLY THR LEU LEU ARG LEU THR 
HIS SER GLY LEU PRO SER ALA GLU GLN CYS 
ALA GLY HIS GLU GLU GLY TRP ALA HIS TYR 
LEU GLY ARG LEU THR GLU VAL ALA ALA GLY 
ARG ASP PRO GLY PRO ASP PRO PHE TYR GLY 
ARG ARG LEU GLU HIS HIS HIS HIS HIS HIS 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
