segName='   A'
seq="""
GLY SER HIS MET ARG LYS LYS ILE PHE LYS 
PRO GLU GLU LEU ARG GLN ALA LEU MET PRO 
THR LEU GLU ALA LEU TYR ARG GLN ASP PRO 
GLU SER LEU PRO PHE ARG GLN PRO VAL ASP 
PRO GLN LEU LEU GLY ILE PRO ASP TYR PHE 
ASP ILE VAL LYS ASN PRO MET ASP LEU SER 
THR ILE LYS ARG LYS LEU ASP THR GLY GLN 
TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP 
VAL TRP LEU MET PHE ASN ASN ALA TRP LEU 
TYR ASN ARG LYS THR SER ARG VAL TYR LYS 
PHE CYS SER LYS LEU ALA GLU VAL PHE GLU 
GLN GLU ILE ASP PRO VAL MET GLN SER LEU 
GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
